Change files in fs_includes to directories

Related: PROD-32863

Change-Id: I18283322c7dc96f59850cf4c02d0f76ebe1d00bf
diff --git a/dogtag/meta/backupninja.yml b/dogtag/meta/backupninja.yml
index c894906..0969f8e 100644
--- a/dogtag/meta/backupninja.yml
+++ b/dogtag/meta/backupninja.yml
@@ -16,11 +16,9 @@
     - /etc/pki/pki-tomcat
     - /etc/sysconfig/pki-tomcat
     - /etc/sysconfig/pki/tomcat/pki-tomcat
-    - /etc/systemd/system/pki-tomcatd.target.wants/pki-tomcatd@$pki-tomcat.service
     - /var/lib/pki/pki-tomcat
     - /var/log/pki/pki-tomcat
-    - /usr/share/pki/server/conf/database.conf
-    - /usr/share/pki/server/conf/schema.conf
-    - /etc/dogtag/ca-certs.p12
+    - /usr/share/pki/server/conf/
+    - /etc/dogtag/
     - /var/lib/dirsrv/slapd-pki-tomcat/bak
     fs_excludes: []